Zok, Tomasz : rechercher sur Z-Library

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1

MCQ4Structures to compute similarity of molecule structures

Zok, Tomasz, Popenda, Mariusz, Szachniuk, Marta

Journal:

Central European Journal of Operations Research

Année:

2014

Langue:

english

Fichier:

PDF, 714 KB

english, 2014

2

Application Scenarios Using Serpens Suite for Kepler Scientific Workflow System

Płóciennik, Marcin, Owsiak, Michał, Zok, Tomasz, Palak, Bartek, Gómez-Iglesias, Antonio, Castejón, Francisco, Lopez-Caniego, Marcos, Plasencia, Isabel Campos, Costantini, Alessandro, Yadykin, Dimitriy

Journal:

Procedia Computer Science

Année:

2012

Langue:

english

Fichier:

PDF, 949 KB

english, 2012

3

Tools, Methods and Services Enhancing the Usage of the Kepler-based Scientific Workflow Framework

Płóciennik, Marcin, Winczewski, Szymon, Ciecieląg, Paweł, Imbeaux, Frederic, Guillerminet, Bernard, Huynh, Philippe, Owsiak, Michał, Spyra, Piotr, Aniel, Thierry, Palak, Bartek, Żok, Tomasz, Pych, Woj

Journal:

Procedia Computer Science

Année:

2014

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2014

4

[IEEE 2012 International Conference on High Performance Computing & Simulation (HPCS) - Madrid, Spain (2012.07.2-2012.07.6)] 2012 International Conference on High Performance Computing & Simulation (HPCS) - High level tools for fusion simulations workflows in distributed computing environment

Plociennik, Marchi, Zok, Tomasz, Owsiak, Michal, Palak, Bartek, Guillerminet, Bernard, Frauel, Yann, Imbeaux, Frederic, Scott, Bruce

Année:

2012

Langue:

english

Fichier:

PDF, 575 KB

english, 2012

5

[IEEE 2012 International Conference on High Performance Computing & Simulation (HPCS) - Madrid, Spain (2012.07.2-2012.07.6)] 2012 International Conference on High Performance Computing & Simulation (HPCS) - Workflows orchestration in distributed computing infrastructures

Plociennik, Marcin, Zok, Tomasz, Gomez-Iglesias, Antonio, Castejon, Francisco, Bustos, Andres, Rodriguez-Pascua, Manuel Aurelio, Velasco, Jose Luis

Année:

2012

Langue:

english

Fichier:

PDF, 287 KB

english, 2012

6

Building the Library of Rna 3D Nucleotide Conformations Using the Clustering Approach

Zok, Tomasz, Antczak, Maciej, Riedel, Martin, Nebel, David, Villmann, Thomas, Lukasiak, Piotr, Blazewicz, Jacek, Szachniuk, Marta

Journal:

International Journal of Applied Mathematics and Computer Science

Année:

2015

Langue:

english

Fichier:

PDF, 777 KB

english, 2015

7

New in silico approach to assessing RNA secondary structures with non-canonical base pairs

Rybarczyk, Agnieszka, Szostak, Natalia, Antczak, Maciej, Zok, Tomasz, Popenda, Mariusz, Adamiak, Ryszard, Blazewicz, Jacek, Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2015

8

Running Simultaneous Kepler Sessions for the Parallelization of Parametric Scans and Optimization Studies Applied to Complex Workflows

Owsiak, Michał, Płóciennik, Marcin, Palak, Bartek, Zok, Tomasz, Reux, Cedric, Di Gallo, Luc, Kalupin, Denis, Johnson, Thomas, Schneider, Mireille

Journal:

Procedia Computer Science

Année:

2016

Langue:

english

Fichier:

PDF, 356 KB

english, 2016

9

Best Practices in Debugging Kepler Workflows

Owsiak, Michał, Płóciennik, Marcin, Palak, Bartek, Zok, Tomasz, Hoenen, Olivier

Journal:

Procedia Computer Science

Année:

2016

Langue:

english

Fichier:

PDF, 218 KB

english, 2016

10

Running simultaneous Kepler sessions for the parallelization of parametric scans and optimization studies applied to complex workflows

Owsiak, Michal, Plociennik, Marcin, Palak, Bartek, Zok, Tomasz, Reux, Cedric, Gallo, Luc Di, Kalupin, Denis, Johnson, Thomas, Schneider, Mireille

Journal:

Journal of Computational Science

Année:

2016

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2016

11

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation

Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Zurkowski, Michal, Adamiak, Ryszard W, Szachniuk, Marta

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 768 KB

english, 2017

12

RNApdbee 2.0: multifunctional tool for RNA structure annotation

Zok, Tomasz, Antczak, Maciej, Zurkowski, Michal, Popenda, Mariusz, Blazewicz, Jacek, Adamiak, Ryszard W, Szachniuk, Marta

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 959 KB

english, 2018

13

LCS-TA to identify similar fragments in RNA 3D structures

Wiedemann, Jakub, Zok, Tomasz, Milostan, Maciej, Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 3.39 MB

english, 2017

14

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs

Antczak, Maciej, Zablocki, Marcin, Zok, Tomasz, Rybarczyk, Agnieszka, Blazewicz, Jacek, Szachniuk, Marta, Valencia, Alfonso

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 447 KB

english, 2018

15

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Sarzynska, Joanna, Ratajczak, Tomasz, Tomczyk, Katarzyna, Adamiak, Ryszard W., Szachniuk, Marta

Journal:

Acta Biochimica Polonica

Année:

2016

Fichier:

PDF, 3.59 MB

2016

16

New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure

Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Sarzynska, Joanna, Ratajczak, Tomasz, Tomczyk, Katarzyna, Adamiak, Ryszard W., Szachniuk, Marta

Journal:

Acta Biochimica Polonica

Année:

2016

Langue:

english

Fichier:

PDF, 3.59 MB

english, 2016

17

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures

Antczak, Maciej, Zok, Tomasz, Osowiecki, Maciej, Popenda, Mariusz, Adamiak, Ryszard W., Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2018

Langue:

english

Fichier:

PDF, 2.33 MB

english, 2018

18

Topology-based classification of tetrads and quadruplex structures

Popenda, Mariusz, Miskiewicz, Joanna, Sarzynska, Joanna, Zok , Tomasz, Szachniuk, Marta, Valencia, Alfonso

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 549 KB

english, 2019

19

RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools

Magnus, Marcin, Antczak, Maciej, Zok, Tomasz, Wiedemann, Jakub, Lukasiak, Piotr, Cao, Yang, Bujnicki, Janusz M, Westhof, Eric, Szachniuk, Marta, Miao, Zhichao

Journal:

Nucleic Acids Research

Année:

2019

Fichier:

PDF, 6.38 MB

2019

20

ElTetrado: a tool for identification and classification of tetrads and quadruplexes

Zok, Tomasz, Popenda, Mariusz, Szachniuk, Marta

Journal:

BMC Bioinformatics

Année:

2020

Fichier:

PDF, 823 KB

2020